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Some notes on preparing your system for Fabien's mesh generation scripts.  This worked on Linux Mint running on VMWare on a Windows 7 laptop.  It should be pretty similar on any Mint or Ubuntu installation.

  #!/bin/bash
  
  # script for getting software needed for Fabien's approach to mesh generation
  
  # This worked on my laptop running Linux Mint in VMWare with a Wondows 7 host.
  # Elmer was already installed, and I used the Elmer installof blas and lapack 
  # (which Fabien's code uses).  I installed yams and medit using Fabien's makefiles 
  # with some minor adjustments.  I installed GLUT, a pre-req for medit.  OpenGL 
  # was already installed on my system.
  #
  # I compiled Fabien's mesh generation code and ran the examples provided in his 
  # zip files.
  #
  # This script gets the files needed and carries out the above installations and 
  # generates Fabien's example meshes.
  # But it comes with no error checking or safety mechanisms.  Maybe it will work for 
  # you.
  
  # Rupert Gladstone (rupertgladstone1972@gmail.com) March 2014.
  
  # download source files
  wget http://www.ann.jussieu.fr/frey/ftp/archives/freeyams.2012.02.05.tgz
  wget http://www.ann.jussieu.fr/frey/ftp/archives/medit.2012.02.05.tgz
  wget http://elmerice.elmerfem.org/wiki/lib/exe/fetch.php?media=courses:gillet_meshadaptation.pdf -O gillet_meshadaptation.pdf
  wget http://elmerice.elmerfem.org/wiki/lib/exe/fetch.php?media=courses:meshadaptation.tar.gz -O meshadaptation.tar.gz
  wget http://elmerice.elmerfem.org/wiki/lib/exe/fetch.php?media=courses:yamsmakefiles_ubuntu64-bit.tar.gz -O yamsmakefiles_ubuntu64-bit.tar.gz
  
  # unpack
  mkdir yams
  mv freeyams.2012.02.05.tgz yams
  cd yams
  gunzip freeyams.2012.02.05.tgz 
  tar -xf freeyams.2012.02.05.tar
  cd ..
  
  mkdir medit
  mv medit.2012.02.05.tgz medit
  cd medit
  gunzip medit.2012.02.05.tgz 
  tar -xf medit.2012.02.05.tar
  cd ..
  
  tar -xf meshadaptation.tar.gz
  tar -xf yamsmakefiles_ubuntu64-bit.tar.gz
  
  # use Fabien's make files for yams and medit instead of the default ones
  cp medit.2012.02.05/* medit
  rm -rf medit.2012.02.05
  cp freeyams.2012.02.05/* yams
  rm -rf freeyams.2012.02.05
  
  # install yams
  cd yams
  # there is a function call that may cause a seg fault.  work around is to comment it out.
  cd sources
  sed -i 's@outqua1_a(sm);@/* outqua1_a(sm); */@g' yams.c
  cd ..
  make
  cd ..
  
  # medit needs openGL plus GLUT. most systems will have openGL already, but 
  # you may need to install GLUT.
  
  #install GLUT in Linux Mint
  sudo apt-get install g++ cmake
  sudo apt-get install freeglut3 freeglut3-dev
  #check where these files were installed
  #dpkg --listfiles freeglut3
  #dpkg --listfiles freeglut3-dev
  #probably here: /usr/lib/x86_64-linux-gnu/libglut.a
  
  # need libxmu for medit as well...
  sudo apt-get install libxmu-dev
  
  # install medit
  cd medit
  make linux
  cd ..
  
  # we can now make and run Fabien's mesh generation code for the first example
  cd MeshAdaptation/Case0_Gaussian
  make
  
  # for Greenland we need to download and process (in Matlab) the measures data
  cd ../Data
  wget ftp://sidads.colorado.edu/pub/DATASETS/nsidc0478_MEASURES_greenland_V01/2000/*
  wget ftp://sidads.colorado.edu/pub/DATASETS/nsidc0478_MEASURES_greenland_V01/2005/*
  wget ftp://sidads.colorado.edu/pub/DATASETS/nsidc0478_MEASURES_greenland_V01/2006/*
  wget ftp://sidads.colorado.edu/pub/DATASETS/nsidc0478_MEASURES_greenland_V01/2007/*
  wget ftp://sidads.colorado.edu/pub/DATASETS/nsidc0478_MEASURES_greenland_V01/2008/*
  
  # we've downloaded the measures vels with a slightly different directory structure...
  sed -i "s@2000/@@g" CreatDEM.m
  sed -i "s@2005/@@g" CreatDEM.m
  sed -i "s@2006/@@g" CreatDEM.m
  sed -i "s@2007/@@g" CreatDEM.m
  sed -i "s@2008/@@g" CreatDEM.m
  
  # then run the matlab script CreatDEM (I did this on a different machine as I 
  # didn't have matlab avialable)
  
  # then we can run the second example
  cd ../Case1_Greenland
  make