I want to package Elmer as Flatpak for Linux distros.
https://www.flatpak.org/
I came across this error.
Code: Select all
[ 67%] Linking CXX executable ElmerGUI
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/BackwardError.F90.o
/usr/lib/gcc/x86_64-unknown-linux-gnu/11.2.0/../../../../x86_64-unknown-linux-gnu/bin/ld: cannot find -lMPI::MPI_C
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/Interpolation.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/BandwidthOptimize.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/Maxwell.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/MaxwellGeneral.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/MaxwellAxiS.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/Differentials.F90.o
[ 67%] Building Fortran object fem/src/CMakeFiles/elmersolver.dir/StressGeneral.F90.o
collect2: error: ld returned 1 exit status
make[2]: *** [ElmerGUI/Application/CMakeFiles/ElmerGUI.dir/build.make:1366: ElmerGUI/Application/ElmerGUI] Error 1
make[1]: *** [CMakeFiles/Makefile2:25231: ElmerGUI/Application/CMakeFiles/ElmerGUI.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
I'm not sure which MPI Elmer need, so I install both openmpi 4.1.1 and mpich 4.0.1.
I tried running
Code: Select all
ld -lMPI::MPI_C --verbose
Code: Select all
ld: mode elf_x86_64
attempt to open /usr/x86_64-unknown-linux-gnu/lib64/libMPI::MPI_C.so failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib64/libMPI::MPI_C.a failed
attempt to open /usr/lib/x86_64-linux-gnu/libMPI::MPI_C.so failed
attempt to open /usr/lib/x86_64-linux-gnu/libMPI::MPI_C.a failed
attempt to open /usr/lib/libMPI::MPI_C.so failed
attempt to open /usr/lib/libMPI::MPI_C.a failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib/libMPI::MPI_C.so failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib/libMPI::MPI_C.a failed
ld: cannot find -lMPI::MPI_C
attempt to open /usr/x86_64-unknown-linux-gnu/lib64/libMPI::MPI_C.so failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib64/MPI::MPI_C.a failed
attempt to open /usr/lib/x86_64-linux-gnu/libMPI::MPI_C.so failed
attempt to open /usr/lib/x86_64-linux-gnu/MPI::MPI_C.a failed
attempt to open /usr/lib/libMPI::MPI_C.so failed
attempt to open /usr/lib/MPI::MPI_C.a failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib/libMPI::MPI_C.so failed
attempt to open /usr/x86_64-unknown-linux-gnu/lib/MPI::MPI_C.a failed
Error: module test: Child process exited with code 1
Only this exist.
Code: Select all
andy@localhost:~/Desktop/Flatpak/fi.csc.Elmer/build/files/lib> ls -l | grep -i mpi
lrwxrwxrwx 1 andy users 13 Mar 23 09:17 libfmpich.so -> libmpifort.so
-rwxr-xr-x 2 andy users 1019 Jan 1 1970 libmca_common_ompio.la
lrwxrwxrwx 1 andy users 30 Mar 23 09:17 libmca_common_ompio.so -> libmca_common_ompio.so.41.29.1
lrwxrwxrwx 1 andy users 30 Mar 23 09:17 libmca_common_ompio.so.41 -> libmca_common_ompio.so.41.29.1
-rwxr-xr-x 2 andy users 63632 Jan 1 1970 libmca_common_ompio.so.41.29.1
-rw-r--r-- 2 andy users 205818154 Jan 1 1970 libmpi.a
lrwxrwxrwx 1 andy users 12 Mar 23 09:17 libmpichcxx.so -> libmpicxx.so
lrwxrwxrwx 1 andy users 13 Mar 23 09:17 libmpichf90.so -> libmpifort.so
lrwxrwxrwx 1 andy users 9 Mar 23 09:17 libmpich.so -> libmpi.so
-rw-r--r-- 2 andy users 606860 Jan 1 1970 libmpicxx.a
-rwxr-xr-x 2 andy users 1006 Jan 1 1970 libmpicxx.la
-rwxr-xr-x 2 andy users 1083 Jan 1 1970 libMPI_cxx.la
lrwxrwxrwx 1 andy users 19 Mar 23 09:17 libmpicxx.so -> libmpicxx.so.12.2.1
lrwxrwxrwx 1 andy users 21 Mar 23 09:17 libMPI_cxx.so -> libMPI_cxx.so.40.30.0
lrwxrwxrwx 1 andy users 19 Mar 23 09:17 libmpicxx.so.12 -> libmpicxx.so.12.2.1
-rwxr-xr-x 2 andy users 157816 Jan 1 1970 libmpicxx.so.12.2.1
lrwxrwxrwx 1 andy users 21 Mar 23 09:17 libMPI_cxx.so.40 -> libMPI_cxx.so.40.30.0
-rwxr-xr-x 2 andy users 121120 Jan 1 1970 libMPI_cxx.so.40.30.0
-rw-r--r-- 2 andy users 1851830 Jan 1 1970 libmpifort.a
-rwxr-xr-x 2 andy users 1013 Jan 1 1970 libmpifort.la
lrwxrwxrwx 1 andy users 20 Mar 23 09:17 libmpifort.so -> libmpifort.so.12.2.1
lrwxrwxrwx 1 andy users 20 Mar 23 09:17 libmpifort.so.12 -> libmpifort.so.12.2.1
-rwxr-xr-x 2 andy users 826792 Jan 1 1970 libmpifort.so.12.2.1
-rwxr-xr-x 2 andy users 970 Jan 1 1970 libmpi.la
-rwxr-xr-x 2 andy users 1044 Jan 1 1970 libMPI.la
-rwxr-xr-x 2 andy users 1099 Jan 1 1970 libMPI_mpifh.la
lrwxrwxrwx 1 andy users 23 Mar 23 09:17 libMPI_mpifh.so -> libMPI_mpifh.so.40.30.0
lrwxrwxrwx 1 andy users 23 Mar 23 09:17 libMPI_mpifh.so.40 -> libMPI_mpifh.so.40.30.0
-rwxr-xr-x 2 andy users 456736 Jan 1 1970 libMPI_mpifh.so.40.30.0
lrwxrwxrwx 1 andy users 16 Mar 23 09:17 libmpi.so -> libmpi.so.12.2.1
lrwxrwxrwx 1 andy users 17 Mar 23 09:17 libMPI.so -> libMPI.so.40.30.1
lrwxrwxrwx 1 andy users 16 Mar 23 09:17 libmpi.so.12 -> libmpi.so.12.2.1
-rwxr-xr-x 2 andy users 40517904 Jan 1 1970 libmpi.so.12.2.1
lrwxrwxrwx 1 andy users 17 Mar 23 09:17 libMPI.so.40 -> libMPI.so.40.30.1
-rwxr-xr-x 2 andy users 1097592 Jan 1 1970 libMPI.so.40.30.1
-rwxr-xr-x 2 andy users 1144 Jan 1 1970 libMPI_usempif08.la
lrwxrwxrwx 1 andy users 27 Mar 23 09:17 libMPI_usempif08.so -> libMPI_usempif08.so.40.30.0
lrwxrwxrwx 1 andy users 27 Mar 23 09:17 libMPI_usempif08.so.40 -> libMPI_usempif08.so.40.30.0
-rwxr-xr-x 2 andy users 297952 Jan 1 1970 libMPI_usempif08.so.40.30.0
-rwxr-xr-x 2 andy users 1093 Jan 1 1970 libMPI_usempi_ignore_tkr.la
lrwxrwxrwx 1 andy users 35 Mar 23 09:17 libMPI_usempi_ignore_tkr.so -> libMPI_usempi_ignore_tkr.so.40.30.0
lrwxrwxrwx 1 andy users 35 Mar 23 09:17 libMPI_usempi_ignore_tkr.so.40 -> libMPI_usempi_ignore_tkr.so.40.30.0
-rwxr-xr-x 2 andy users 59152 Jan 1 1970 libMPI_usempi_ignore_tkr.so.40.30.0
lrwxrwxrwx 1 andy users 9 Mar 23 09:17 libmpl.so -> libmpi.so
-rwxr-xr-x 2 andy users 977 Jan 1 1970 libompitrace.la
lrwxrwxrwx 1 andy users 23 Mar 23 09:17 libompitrace.so -> libompitrace.so.40.30.0
lrwxrwxrwx 1 andy users 23 Mar 23 09:17 libompitrace.so.40 -> libompitrace.so.40.30.0
-rwxr-xr-x 2 andy users 22568 Jan 1 1970 libompitrace.so.40.30.0
lrwxrwxrwx 1 andy users 9 Mar 23 09:17 libopa.so -> libmpi.so
-rwxr-xr-x 2 andy users 997 Jan 1 1970 libopen-orted-mpir.la
-rwxr-xr-x 2 andy users 14008 Jan 1 1970 libopen-orted-mpir.so
lrwxrwxrwx 1 andy users 33 Mar 23 09:17 libvtkFiltersParallelMPI-9.1.so -> libvtkFiltersParallelMPI-9.1.so.1
lrwxrwxrwx 1 andy users 37 Mar 23 09:17 libvtkFiltersParallelMPI-9.1.so.1 -> libvtkFiltersParallelMPI-9.1.so.9.1.0
-rwxr-xr-x 2 andy users 129248 Jan 1 1970 libvtkFiltersParallelMPI-9.1.so.9.1.0
lrwxrwxrwx 1 andy users 25 Mar 23 09:17 libvtkIOMPIImage-9.1.so -> libvtkIOMPIImage-9.1.so.1
lrwxrwxrwx 1 andy users 29 Mar 23 09:17 libvtkIOMPIImage-9.1.so.1 -> libvtkIOMPIImage-9.1.so.9.1.0
-rwxr-xr-x 2 andy users 88280 Jan 1 1970 libvtkIOMPIImage-9.1.so.9.1.0
lrwxrwxrwx 1 andy users 28 Mar 23 09:17 libvtkIOMPIParallel-9.1.so -> libvtkIOMPIParallel-9.1.so.1
lrwxrwxrwx 1 andy users 32 Mar 23 09:17 libvtkIOMPIParallel-9.1.so.1 -> libvtkIOMPIParallel-9.1.so.9.1.0
-rwxr-xr-x 2 andy users 125152 Jan 1 1970 libvtkIOMPIParallel-9.1.so.9.1.0
lrwxrwxrwx 1 andy users 26 Mar 23 09:17 libvtkParallelMPI-9.1.so -> libvtkParallelMPI-9.1.so.1
lrwxrwxrwx 1 andy users 30 Mar 23 09:17 libvtkParallelMPI-9.1.so.1 -> libvtkParallelMPI-9.1.so.9.1.0
-rwxr-xr-x 2 andy users 96472 Jan 1 1970 libvtkParallelMPI-9.1.so.9.1.0
-rwxr-xr-x 2 andy users 5922 Jan 1 1970 mpi_ext.mod
-rwxr-xr-x 2 andy users 1623 Jan 1 1970 mpi_f08_callbacks.mod
-rwxr-xr-x 2 andy users 9933 Jan 1 1970 mpi_f08_ext.mod
-rwxr-xr-x 2 andy users 1995 Jan 1 1970 mpi_f08_interfaces_callbacks.mod
-rwxr-xr-x 2 andy users 50479 Jan 1 1970 mpi_f08_interfaces.mod
-rwxr-xr-x 2 andy users 119353 Jan 1 1970 mpi_f08.mod
-rwxr-xr-x 2 andy users 13842 Jan 1 1970 mpi_f08_types.mod
-rwxr-xr-x 2 andy users 95306 Jan 1 1970 mpi.mod
-rwxr-xr-x 2 andy users 1132 Jan 1 1970 ompi_monitoring_prof.la
-rwxr-xr-x 2 andy users 22568 Jan 1 1970 ompi_monitoring_prof.so
drwxr-xr-x 1 andy users 7416 Jan 1 1970 openmpi
-rwxr-xr-x 2 andy users 50550 Jan 1 1970 pmpi_f08_interfaces.mod
https://github.com/kevinsmia1939/flathu ... .csc.Elmer
Thanks